Expression Level Polymorphism Project



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ELP Microarray Database


Experiment Description
Microarrays
Samples
(links to ELP Microarray Database)
ArrayExpress
Data Set
Related Publications
SA response in seven Arabidopsis accessions at three time points post-treatment.
126
SA-treated and control samples (3 biological replicates) Kliebenstein et al. 2006(a)
van Leeuwen et al. 2007
JA response in the Bayreuth-0 and Shahdara accessions at three time points post-treatment.
12
control samples (2 biological replicates) West et al. 2006
12
JA-treated samples (2 biological replicates)
coming soon
JA manuscript in preparation
SA response in the Bayreuth-0 and Shahdara accessions at three time points post-treatment.
12
control samples (2 biological replicates) West et al. 2006
12
SA-treated samples (2 biological replicates)
coming soon
SA manuscript in preparation
eQTL mapping with 211 Bay-0 x Sha RILs (SA treated and controls) at one time point post-treatment.

4 separate analyses were performed with this dataset:
A: marker development with 148 RILs (silwet controls only)


B: network eQTL mapping in 148 RILs with a priori defined gene networks

**The 148 RILs are a subset of the 211 RIL set**
8

+

296
Bay-0 and Sha controls (4 biological replicates)


148 RILs, controls only (2 biological replicates)
West et al. 2006



Kliebenstein et al. 2006(b)
C: eQTL studies with full set of 211 RILs (silwet controls only)
16

+

422
West et al. 2007
D: eQTL studies with full set of 211 RILs (SA-treatment)
16

+

422
Bay-0 and Sha, SA-treated (8 biological replicates)


211 RILs, SA-treated (2 biological replicates)
coming soon
eQTL (SA-treatment) manuscript in preparation




Contact information.

last modified on September 5, 2007