Expression Level Polymorphism Project

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Intranet - SMA 211 RILs

This tool allows you to retrieve the results from the SMA of the 211 RILs with the 540 SFP markers plus 38 microsatellite markers.

Step 1. Enter your gene(s) of interest.
  • You can enter either Affymetrix ATH1 GeneChip probeset IDs (e.g. 265070_at) or Arabidopsis gene codes (e.g. At1g55510).
  • Multiple entries on separate lines.
  • Maximum number of genes: 1000.

Step 2. Select the marker(s) of interest.
  • Multiple markers can be selected using CTRL or SHIFT keys.

Step 3. From which treatment do you want the data?

SW, Silwet control treatment
SA, Salicylic acid treatment

Step 4. What data do you want to retrieve?

eQTLs identified via SMA
t-statistics for testing eQTL via SMA
corresponding p-values of t-statistics via SMA

Step 5. Output options

Data orientation:

rows = genes/probesets, columns = markers
rows = markers, columns = genes/probesets

Data format:

Formatted Table (can be copied/pasted into Excel)
CSV (can be imported into Excel)

Step 6.

Author: Hans van Leeuwen.


Affymetrix ATH1 GeneChip:
Arabidopsis ATH1 Genome Array.

Contact information.

last modified on June 13, 2006